First of all, Nitrosomonas bacteria break down ammonia into nitrites (NO2).
Secondly, Nitrobacter bacteria break down nitrites into nitrates (NO3).
Lastly, Anaerobic bacteria break up NO3 to obtain oxygen and release Nitrogen gas.
Thus for your experiment you should use Ammonia instead of NO3. NO3 should not go anywhere because that is the final product.
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