Besides turning on the filter, you also have to do a water change. If you leave a previously working filter turned off for a day, then the contents will start to breakdown inside and the output will be ammonia and nitrite. Very, very bad for your fauna.
As for keeping the water clear, you might want to go out and get another pack of gravel to top up the substrate. Usually, the base fertilizer is just a thin layer and the layer holding it down from above is a thick one. This prevents the fertilisers from leeching into the water column and thus causing a water chemistry challenge.
Cheers,
I have dwarf cichlids in my tanks! Do you?
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