Thats quite a normal phenomenon, especially in new tank setups, the bubbles are the hydrogen sulphide gas by-products of anaerobic bacteria inside the soil substrate... it tends to form in deeper soil because there is less circulation and oxygen in them.
Usually if you have rooted plants, their roots will help aerate and bring oxygen down into the soil, so there will be alot less of those bubbles being produced.
If you don't have much rooted plants, then either just leave it alone or use a stick to poke the substrate to release the bubbles during regular tank maintenance... do be careful when doing this as the gas can sometimes build up to high concentration if not touched after a long time and the large release of gas could potentially harm sensitive livestock, including emitting a very stinky "rotten eggs" smell into your room.
Your soil substrate having 2 different colors is due to the aquarium light illuminating the top layer, while the bottom layer is blocked from light so it looks darker.![]()
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