While you were rescaping, you could have disturbed the substrate and hit pockets of anerobic areas. These dead spots sometimes produces Hydrogen sulphate gas bubbles too. They smell like rotton eggs. The foul smell from dead roots indicated that they were already dead and rotten.
The fishes could be affect by the Hydrogen sulphate gas as well as the other base fertiliser leeching into the water column during the rescaping. Excess metal content and N (Nitrogen) content in the water can kill the fishes.
As for the temperature, there drop was gradual and should not affect the fishes that much.
Cheers,
I have dwarf cichlids in my tanks! Do you?
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