1. Flying foxes are known as the False Siamese Algae Eater. If I'm not wrong they do not eat algae at all. Both do not harm plants.
2. Are they newly introduced? They tend to do that when they're new to the tank, or when water conditions aren't what they like, or more likely there's a predator fish in your tank (Cichlids, angelfish, apistos)
3. How big is it? If your shrimp can fit into it's mouth, it's most likely the cause for your hiding shrimp.
4. That's important in a big tank, water circulation indeed brings nutrients to the plants like CO2 etc. Generally, if you feel a place has no circulation, it probably doesn't. I've read suggestions about placing a rainbar at the back of the tank above the substrate line to help circulation.
5. Nope. There've been numerous discussions on this particularly at Aquatic Plant Central. Some say yes, some say no. If you ask me, I say experiment and do what you like.
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