I really don't see any issue with aquasoil except that it makes measuring CO2 difficult. All you need to do for a new tank is to simply add "mulm" aka dirt from an established filter to the substrate bottom and the filter as well as high plant mass with some floaters for non-CO2 type tank and that's about it. The bacteria and plants would go after the NH3/NH4 source immediately and you shouldn't have issues. The other thing is having enough surface movement so that gas exchange can occur to allow O2 to get in if its running low.
Regards
Peter Gwee
Plant Physiology by Taiz and Zeiger
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