I don't really get it. This is a VERY fresh tank, and it's probably not even fully cycled yet. For sure not to a state where there's a stable bacteria culture. If you change filters now, you will only lose a part of the first two weeks' development. Did you already introduce fish, or why are you so bound on not losing those two weeks?
That would sum up the flow rate of both filters, but, hey, it's your tornado fish tank.
Take turns? Within the few weeks of running them parallel? Jeez, how often do you think you have to wash an external canister filter? They remain unopened for several months! And even then you don't have to "wash" them, only remove the debris buildup.
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