Good CO2 with respect to the amount of light will stop the new growth of BBA but doesn't kill them. You need to trim them off on plants or bleach them on equipment and etc to get rid of them. The fact that BBA is still growing in your non-CO2 tank tells you that the amount of light is still too strong (CO2 demand still too high for the current tank.). Just get rid of your current BBA via methods as stated and then raise the light or ways to reduce the intensity.
Regards,
Peter Gwee
Plant Physiology by Taiz and Zeiger
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