When you wash the Aquasoil, you are basically breaking it down into "mud". Not a good idea, and definitely not standard practice with such soils. Lay them as you wish, then place the bag over the soil and pour water in slowly. Rushing it will not help. Like what squee said, if you set it up properly you won't have an issue at all.
By the way, the pieces of wood and twigs are normal. They typically float to the water surface after the tank has been filled. All you need to do at that time is net them out.
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